AVIS-IBIS

Birds of Indian Subcontinent

Species trees for the tree swallows (Genus Tachycineta): An alternative phylogenetic hypothesis to the mitochondrial gene tree

Publication Type:Journal Article
Year of Publication:2012
Authors:Dor, R, Carling, MD, Lovette, IJ, Sheldon, FH, Winkler, DW
Journal:Molecular Phylogenetics and Evolution
Volume:65
Date Published:2012
ISBN Number:1055-7903
Keywords:*BEAST, Bayesian, best, Hirundinidae, Hirundo, Hirundo rustica, Multi-locus, nuclear, phylogeny, Tachycineta, Tachycineta bicolor
Abstract:The New World swallow genus Tachycineta comprises nine species that collectively have a wide geographic distribution and remarkable variation both within- and among-species in ecologically important traits. Existing phylogenetic hypotheses for Tachycineta are based on mitochondrial DNA sequences, thus they provide estimates of a single gene tree. In this study we sequenced multiple individuals from each species at 16 nuclear intron loci. We used gene concatenated approaches (Bayesian and maximum likelihood) as well as coalescent-based species tree inference to reconstruct phylogenetic relationships of the genus. We examined the concordance and conflict between the nuclear and mitochondrial trees and between concatenated and coalescent-based inferences. Our results provide an alternative phylogenetic hypothesis to the existing mitochondrial DNA estimate of phylogeny. This new hypothesis provides a more accurate framework in which to explore trait evolution and examine the evolution of the mitochondrial genome in this group.
URL:http://www.sciencedirect.com/science/article/pii/S1055790312002461
Scratchpads developed and conceived by (alphabetical): Ed Baker, Katherine Bouton Alice Heaton Dimitris Koureas, Laurence Livermore, Dave Roberts, Simon Rycroft, Ben Scott, Vince Smith